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Small and medium business | Business Central, N...
Suggested Answer

Business central Reconciliation of Shopify Payouts

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Posted on by 28
Hi All,
 
I am encountering a situation where reconciling Shopify payments seems to be a challenge. We are a custom furniture manufacturer that sells entirely on Shopify, and we're switching to Business Central from QuickBooks Desktop. I've read and understood the passage in Microsoft learn where you set up an interim (in our case, a bank account) account for orders to go into, and then from there you deduct from that account into your bank account and merchant fee G/L account when the payout hits the actual bank account. 
 
Our issue in this scenario is that it takes us weeks from the time of order to shipping out the product, so I cannot hit post-> ship and invoice, or else it will mark it as shipped, and it wouldn't be. I've tried to just post -> invoice, and I repeatedly get the error that there is nothing to invoice, and I'm unsure how to get past it. We currently have it set up to create each order as a sales order and have it released, so I have it figured out up to that step of the process. 
 
Our ideal situation is that the order would be created as a sales order, we would then invoice it (so it would hit the "SHOPIFY" bank account), then when we go to ship it out it would allow us to mark it as shipped, then the last step would be when the payout hits, we just go in and deduct from the "SHOPIFY" bank account and add to our bank account and merchant fee GL account. This all seems like it is unable to work due to the issue I'm encountering when trying to just POST -> Invoice the order.
 
Am I doing something wrong here in the setup, or is there an easier way of doing this? I'm new to Business Central and have a good understanding, but I feel like I'm just missing something while setting this up. Please let me know if there is anything you need to know about our setup, and I appreciate all of the help!!!
I have the same question (0)
  • Suggested answer
    OussamaSabbouh Profile Picture
    12,878 Super User 2026 Season 1 on at
    Hello,
     
    You can’t invoice a Sales Order unless something is shipped. That’s why “Post → Invoice” says there’s nothing to invoice. BC is shipment-driven by design, unlike QuickBooks. The supported flow is Sales Order → Ship when it actually ships → Invoice at shipment → post to a Shopify clearing account → reconcile payouts later. Invoicing weeks before shipment isn’t supported unless you switch to Sales Invoices (no shipment tracking) or customize heavily.
     
    Regards,
    Oussama Sabbouh
  • Suggested answer
    YUN ZHU Profile Picture
    99,084 Super User 2026 Season 1 on at
    In BC, prepayment invoices can be sent before shipment, but as far as I know, this is not currently supported by Shopify integration.
    Create prepayment invoices
     
    Thanks.
    ZHU
  • Matt47336 Profile Picture
    28 on at
    Thank you both for your answers!
     
    @oussamaSabbouh - Is there a way to easily switch Business Central from making a sales order to a sales invoice? We would like to immediately take the money from the order and put it into the Shopify clearing bank account.
     
    @YUN ZHU - This could work, but we would like to make everything a little more automated. Is there a way to have Business Central automatically create the prepayment invoice as the sales order gets created? Under the customer template used for Shopify order/customer import, there isn't a way to make them all come in with a 100% prepayment amount when they get created. Is there any way that this could be possible? 
     
    Again, thank you so much for all of your help! 
  • Suggested answer
    YUN ZHU Profile Picture
    99,084 Super User 2026 Season 1 on at
    As far as I know, the standard cannot achieve this; it requires customization.
    You can set a default prepayment ratio, but automatic posting is not possible.
     
    Thanks.
    ZHU
  • Suggested answer
    Khushbu Rajvi. Profile Picture
    22,128 Super User 2026 Season 1 on at
    Customization is required if you want orders to auto-generate and post prepayment invoices on import from Shopify.

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