I am working through pre audit as well as a software transition and it looks like there are several checks that are still showing open in Microsoft Dynamics GP that we did a JE in Quickbooks to clear in the new software. How can I show those as reconciled in Dynamics and not void them out?
Ho do I clear a check in Great plains that has been reconciled in a new accounting system
It sounds like you dated the Quickbooks (QB) journal entries (JEs) to void the checks with a date prior to your conversion (and for a date that you had reconciled the checkbook in GP). If that is correct, the process in GP would be to enter Increase Adjustments (IAJs) in the Bank Transaction Entry for each item with the same pre-conversion date for each transaction. (Use the same offset account(s) you used in the QB JEs.)
Once you have all the IAJs posted, you can return to GP's Reconcile Bank and enter the same last Ending Date/Bank Statement Balance that you had previously completed in GP. Mark off both the original check and the new IAJ for each check that you want "gone". That should net to a $0 change in GP and allow you to complete the reconciliation with only "clearing" those entries.
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